This is an alphabetical list of fungal taxa as recorded from South Africa. Currently accepted names have been appended.
Genus Abrothallus Pérez-Ort. & Suija (2013), Abrothallaceae (Lichenicolous fungi)
Genus Acarospora A.Massal. (1852) Acarosporaceae (Lichenised fiungi)
Family: Acarosporaceae Zahlbr. 1906[1]
Genus: Achorion Remak 1845
Genus: Acremoniella Sacc. 1886
Genus: Acremonium Link 1809
Genus: Acrospeira Berk. & Broome 1857
Genus: Actinonema
Genus: Actinopeltella
Genus: Aecidium Pers. 1796, accepted as Puccinia Pers., (1794), (Rust fungi)
Genus: Aegerita Pers. 1794,
Family: Agaricaceae Chevall. 1826[2]
Genus: Agaricus L. 1753
Genus: Aithaloderma Syd. & P. Syd. 1913
Genus: Alectoria Ach. 1809?(lichens)
Genus: Aleurodiscus
Genus: Allantonectria Earle 1901, accepted as Thyronectria Sacc., (1875), Sordariomycetes
Genus: Allarthothelium (Vain.) Zahlbr. 1908, accepted as Arthonia Ach., (1806) (Ramalinaceae C. Agardh [as 'Ramalineae'], (1821)
Genus: Allomyces E.J. Butler 1911
Genus: Aloysiella Mattir. & Sacc. 1908, accepted as Metacapnodium Speg., (1918)
Genus: Alternaria Nees 1816
Genus: Amanita
Genus: Amanitopsis Roze accepted as Amanita Pers. (1794)
Family: Amaurochaetaceae[4] Rostaf. ex Cooke 1877
Genus: Amaurochaete Rostaf. 1873
Genus: Amauroderma Murrill, (1905)
Genus: Amazonia Theiss. 1913
Genus: Amphiloma Nyl. (1855), accepted as Lepraria Ach. (1803)
Genus: Anaptychia Körb. 1848
Genus: Anelleria
Genus: Angelina Fr. 1849
Genus: Antennaria Link 1809
Genus: Anthostomella Sacc. 1875
Genus: Anthracophyllum Ces. 1879
Genus: Anthracothecium Hampe ex A. Massal. 1860
Genus: Anthurus Kalchbr. & MacOwan 1880
Genus: Aphysa Theiss. & Syd. 1917, accepted as Coleroa Rabenh., (1850)
Genus: Appendiculella Höhn. 1919
Family: Arachniaceae[4] Coker & Couch 1928
Genus: Arachnion Schwein. 1822
Genus: Arcangeliella Cavara 1900 accepted as Lactarius Pers., (1797)
Genus: Arctomia Th. Fr. 1861 (lichens)
Genus: Armillaria (Fr.) Staude 1857
Genus: Arrhenia Fr. 1849
Family: Arthoniaceae Rchb. 1841[5]
Genus: Arthonia Ach. 1806
Genus: Arthopyrenia A. Massal. 1852
Genus: Arthothelium A. Massal. 1852 (Lichens)
Genus: Arthrobotryum Ces. 1854
Genus: Arthrosporium Sacc. 1880
Genus: Ascobolus Pers. ex J.F. Gmel. 1792
Genus: Ascochyta Lib. 1830
Genus: Ascophanus Boud. 1869
Genus: Ascostratum Syd. & P. Syd. 1912
Genus: Ascotricha Berk. 1838,
Genus: Aseroe Labill. 1800
Family: Ashbyaceae C.W. Dodge 1935[5]
Genus: Ashbya Guillierm. 1928[5]
Genus: Aspergillus P. Micheli 1729
Genus: Aspicilia A. Massal. 1852
Genus: Asterella (may refer to Asterella Rostr. 1888, accepted as Venturia; Venturiaceae, Asterella (Sacc.) Sacc. 1891, accepted as Asterina; Asterinaceae, or Asterella Hara 1936, accepted as Astrosphaeriella; Pleosporales)
Family: Asterinaceae Hansf. 1946[5]
Genus: Asterina Lév. 1845
Genus: Asterinella Theiss. 1912
Genus Asterodothis Theiss. 1912
Genus: Asterolibertia G. Arnaud 1918
Genus: Asteroma DC. 1815
Genus: Asteromyxa Theiss. & Syd. 1918 accepted as Dimeriella Speg., (1908)
Genus: Asterostomella Speg. 1886
Genus: Asterostroma Massee 1889
Genus: Asterostromella Höhn. & Litsch. 1907 accepted as Vararia P. Karst., (1898)
Genus: Astrosporina J. Schröt. 1889 accepted as Inocybe (Fr.) Fr., (1863)
Family: Astrotheliaceae Zahlbr. 1898[6]
Genus: Auerswaldia possibly Rabenh. 1857, accepted as Melanospora Ceratostomataceae, or Auerswaldia Sacc. 1883; Dothideaceae
Family: Auriculariaceae Fr. 1838
Genus: Auricularia Bull. 1780