SATB1 is as a key factor for regulating spatial genome organization and subsequently integrating higher-order chromatin architecture with gene regulation.[12] By binding to MARs and tethering these to the nuclear matrix, SATB1 creates chromatin loops.[13][14][15] By changing the chromatin-loop architecture SATB1 is able to change gene transcription.[16] The majority of SATB1 binding sites in the DNA are occupied by CTCF as well,[17] another important chromatin organizer.
Immune system
SATB1 has a multitude of roles in the development of T cells.
SATB1 plays a role in controlling expression of lineage-specific factors during T cell development, including ThPOK, Runx3, CD4, CD8, and Treg factor Foxp3. SATB1-deficient thymocytes enter inappropriate T lineages and fail to generate the NKT and Treg subsets.[18] The Treg deficiency subsequently causes an auto-immune phenotype in Satb1-deficient mouse models.[19] The auto-immune phenotype is associated with loss of SATB1-dependent spatial rearrangement of the TCRα enhancer and the TCR locus, controlling TCR recombination[20] via downregulation of the Rag1 and Rag2 genes.[21]
SATB1 has been described to play a role in a variety of different cellular processes, including epidermal differentiation,[24] brain development,[25] X-chromosome inactivation,[26] and embryonic stem cell differentiation.[27]
The ULD and CUTL domains at the N-terminal are important for tetramerization and subsequent DNA-binding of SATB1.[28] This N-terminal region can be cleaved off by caspase-6[29][30] and caspase-3[31] during apoptosis, resulting in dissociation from the chromatin.
The CUT1 domain contains a five-helix structure that is crucial for SATB1 binding to MARs with the third helix deeply entering the major groove of the DNA and making direct contacts with the bases.[10] While CUT1 is essential for binding to MAR-sites, the CUT2 domain is dispensable.[9]
The SATB1 homeobox domain confers poor DNA-binding ability by itself, but has been found to increase the DNA-binding affinity and specificity of SATB1 in combination with the CUT domains.[11][9]
Nonsense and frameshift mutations are associated with a distinct neurodevelopmental condition characterized by mild global developmental delay with variably impaired intellectual development (DEvelopmental delay with dysmorphic Facies and Dental Anomalies; DEFDA).[34]
In contrast, in CD8+ and CD4 + T cells, Satb1 has been demonstrated to be crucial for anti-tumor immunity by regulating PD-1 expression.[42] T-cells that do not express Satb1 were shown to have less anti-tumor activity,[42] and mice lacking Satb1 expression in CD4+ T cells develop intra-tumoral tertiary lymphoid structures.[43]
^Bode J, Kohwi Y, Dickinson L, Joh T, Klehr D, Mielke C, Kohwi-Shigematsu T (January 1992). "Biological significance of unwinding capability of nuclear matrix-associating DNAs". Science. 255 (5041): 195–197. Bibcode:1992Sci...255..195B. doi:10.1126/science.1553545. PMID1553545.
^Dickinson LA, Joh T, Kohwi Y, Kohwi-Shigematsu T (August 1992). "A tissue-specific MAR/SAR DNA-binding protein with unusual binding site recognition". Cell. 70 (4): 631–645. doi:10.1016/0092-8674(92)90432-c. PMID1505028. S2CID41115832.
^Galande S, Purbey PK, Notani D, Kumar PP (October 2007). "The third dimension of gene regulation: organization of dynamic chromatin loopscape by SATB1". Current Opinion in Genetics & Development. Differentiation and gene regulation. 17 (5): 408–414. doi:10.1016/j.gde.2007.08.003. PMID17913490.
^Kumar PP, Bischof O, Purbey PK, Notani D, Urlaub H, Dejean A, Galande S (January 2007). "Functional interaction between PML and SATB1 regulates chromatin-loop architecture and transcription of the MHC class I locus". Nature Cell Biology. 9 (1): 45–56. doi:10.1038/ncb1516. hdl:11858/00-001M-0000-0012-E256-8. PMID17173041. S2CID23337965.
^Sun Y, Wang T, Su Y, Yin Y, Xu S, Ma C, Han X (March 2006). "The behavior of SATB1, a MAR-binding protein, in response to apoptosis stimulation". Cell Biology International. 30 (3): 244–247. doi:10.1016/j.cellbi.2005.10.025. PMID16377216. S2CID26706596.
^Tu W, Luo M, Wang Z, Yan W, Xia Y, Deng H, et al. (August 2012). "Upregulation of SATB1 promotes tumor growth and metastasis in liver cancer". Liver International. 32 (7): 1064–1078. doi:10.1111/j.1478-3231.2012.02815.x. PMID22583549. S2CID23581044.
^Zhang H, Qu S, Li S, Wang Y, Li Y, Wang Y, et al. (June 2013). "Silencing SATB1 inhibits proliferation of human osteosarcoma U2OS cells". Molecular and Cellular Biochemistry. 378 (1–2): 39–45. doi:10.1007/s11010-013-1591-0. PMID23516037. S2CID254798923.
^Durrin LK, Krontiris TG (June 2002). "The thymocyte-specific MAR binding protein, SATB1, interacts in vitro with a novel variant of DNA-directed RNA polymerase II, subunit 11". Genomics. 79 (6): 809–817. doi:10.1006/geno.2002.6772. PMID12036295.
Further reading
Robertson NG, Khetarpal U, Gutiérrez-Espeleta GA, Bieber FR, Morton CC (September 1994). "Isolation of novel and known genes from a human fetal cochlear cDNA library using subtractive hybridization and differential screening". Genomics. 23 (1): 42–50. doi:10.1006/geno.1994.1457. PMID7829101.
Xu L, Deng HX, Xia JH, Yang Y, Fan CH, Hung WY, Siddque T (1997). "Assignment of SATB1 to human chromosome band 3p23 by in situ hybridization". Cytogenetics and Cell Genetics. 77 (3–4): 205–206. doi:10.1159/000134577. PMID9284917.
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