^Since the winner of the 2016–17 Estonian Cup FCI Tallinn had qualified to Champions League, the cup winners' spot was inherited by fourth-placed club Flora.
Updated to match(es) played on 23 October 2016. Source: soccerway Rules for classification: 1) points; 2) goal difference; 3) number of goals scored (C) Champions; (P) Promoted; (R) Relegated
Updated to match(es) played on 23 October 2016. Source: soccerway Rules for classification: 1) points; 2) goal difference; 3) number of goals scored (C) Champions; (P) Promoted; (R) Relegated
Updated to match(es) played on 9 October 2016. Source: [citation needed] Rules for classification: 1) points; 2) goal difference; 3) number of goals scored (C) Champions; (P) Promoted; (R) Relegated
Updated to match(es) played on 9 October 2016. Source: soccerway Rules for classification: 1) points; 2) goal difference; 3) number of goals scored (C) Champions; (P) Promoted; (R) Relegated
Updated to match(es) played on 9 October 2016. Source: soccerway Rules for classification: 1) points; 2) goal difference; 3) number of goals scored (C) Champions; (P) Promoted; (R) Relegated
Updated to match(es) played on 9 October 2016. Source: soccerway Rules for classification: 1) points; 2) goal difference; 3) number of goals scored (C) Champions; (P) Promoted; (R) Relegated
Updated to match(es) played on 9 October 2016. Source: soccerway Rules for classification: 1) points; 2) goal difference; 3) number of goals scored (C) Champions; (P) Promoted
Updated to match(es) played on 9 October 2016. Source: soccerway Rules for classification: 1) points; 2) goal difference; 3) number of goals scored (C) Champions; (P) Promoted
Updated to match(es) played on 9 October 2016. Source: soccerway Rules for classification: 1) points; 2) goal difference; 3) number of goals scored (C) Champions; (P) Promoted