Founded in 2009, Millat FC has been competing in the MFA Elite Division since the restructured 2018-19 season.[2]
In the 2022–23 MFA Elite Division season, Millat secured the third spot after beating Bombay Muslims SC 3–1.[3] Since Karnataka Sporting was not eligible to represent Maharashtra in the newly formed I-League 3, Millat FC was nominated for the inaugural season.[4][5][6][7]