ERCC4

ERCC4
Available structures
PDBOrtholog search: PDBe RCSB
Identifiers
AliasesERCC4, ERCC11, FANCQ, RAD1, XPF, XFEPS, excision repair cross-complementation group 4, ERCC excision repair 4, endonuclease catalytic subunit
External IDsOMIM: 133520; MGI: 1354163; HomoloGene: 3836; GeneCards: ERCC4; OMA:ERCC4 - orthologs
Orthologs
SpeciesHumanMouse
Entrez
Ensembl
UniProt
RefSeq (mRNA)

NM_005236

NM_015769

RefSeq (protein)

NP_005227

NP_056584

Location (UCSC)Chr 16: 13.92 – 13.95 MbChr 16: 12.93 – 12.97 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

ERCC4 is a protein designated as DNA repair endonuclease XPF that in humans is encoded by the ERCC4 gene. Together with ERCC1, ERCC4 forms the ERCC1-XPF enzyme complex that participates in DNA repair and DNA recombination.[5][6]

The nuclease enzyme ERCC1-XPF cuts specific structures of DNA. Many aspects of these two gene products are described together here because they are partners during DNA repair. The ERCC1-XPF nuclease is an essential activity in the pathway of DNA nucleotide excision repair (NER). The ERCC1-XPF nuclease also functions in pathways to repair double-strand breaks in DNA, and in the repair of "crosslink" damage that harmfully links the two DNA strands.

Cells with disabling mutations in ERCC4 are more sensitive than normal to particular DNA damaging agents, including ultraviolet radiation and to chemicals that cause crosslinking between DNA strands. Genetically engineered mice with disabling mutations in ERCC4 also have defects in DNA repair, accompanied by metabolic stress-induced changes in physiology that result in premature aging.[7] Complete deletion of ERCC4 is incompatible with viability of mice, and no human individuals have been found with complete (homozygous) deletion of ERCC4. Rare individuals in the human population harbor inherited mutations that impair the function of ERCC4. When the normal genes are absent, these mutations can lead to human syndromes, including xeroderma pigmentosum, Cockayne syndrome and Fanconi anemia.

ERCC1 and ERCC4 are the human gene names and Ercc1 and Ercc4 are the analogous mammalian gene names. Similar genes with similar functions are found in all eukaryotic organisms.

Gene

The human ERCC4 gene can correct the DNA repair defect in specific ultraviolet light (UV)-sensitive mutant cell lines derived from Chinese hamster ovary cells.[8] Multiple independent complementation groups of Chinese hamster ovary (CHO) cells have been isolated,[9] and this gene restored UV resistance to cells of complementation group 4. Reflecting this cross-species genetic complementation method, the gene was called "Excision repair cross-complementing 4"[10]

The human ERCC4 gene encodes the XPF protein of 916 amino acids with a molecular mass of about 104,000 daltons.

Genes similar to ERCC4 with equivalent functions (orthologs) are found in other eukaryotic genomes. Some of the most studied gene orthologs include RAD1 in the budding yeast Saccharomyces cerevisiae, and rad16+ in the fission yeast Schizosaccharomyces pombe.

Protein

Figure 1: Diagram of XPF showing an inactive helicase domain, a nuclease domain and a helix-hairpin-helix domain

One ERCC1 molecule and one XPF molecule bind together, forming an ERCC1-XPF heterodimer which is the active nuclease form of the enzyme. In the ERCC1–XPF heterodimer, ERCC1 mediates DNA– and protein–protein interactions. XPF provides the endonuclease active site and is involved in DNA binding and additional protein–protein interactions.[8]

The ERCC4/XPF protein consists of two conserved areas separated by a less conserved region in the middle. The N-terminal area has homology to several conserved domains of DNA helicases belonging to superfamily II, although XPF is not a DNA helicase.[11] The C-terminal region of XPF includes the active site residues for nuclease activity.[12] (Figure 1).

Most of the ERCC1 protein is related at the sequence level to the C terminus of the XPF protein.,[13] but residues in the nuclease domain are not present. A DNA binding "helix-hairpin-helix" domain at the C-terminus of each protein.

By primary sequence and protein structural similarity, the ERCC1-XPF nuclease is a member of a broader family of structure specific DNA nucleases comprising two subunits. Such nucleases include, for example, the MUS81-EME1 nuclease.

Structure-specific nuclease

Figure 2: DNA substrates of ERCC1-XPF nuclease

The ERCC1–XPF complex is a structure-specific endonuclease. ERCC1-XPF does not cut DNA that is exclusively single-stranded or double-stranded, but it cleaves the DNA phosphodiester backbone specifically at junctions between double-stranded and single-stranded DNA. It introduces a cut in double-stranded DNA on the 5′ side of such a junction, about two nucleotides away[14] (Figure 2). This structure-specificity was initially demonstrated for RAD10-RAD1, the yeast orthologs of ERCC1 and XPF.[15]

The hydrophobic helix–hairpin–helix motifs in the C-terminal regions of ERCC1 and XPF interact to promote dimerization of the two proteins.[16][17] There is no catalytic activity in the absence of dimerization. Indeed, although the catalytic domain is within XPF and ERCC1 is catalytically inactive, ERCC1 is indispensable for activity of the complex.

Several models have been proposed for binding of ERCC1–XPF to DNA, based on partial structures of relevant protein fragments at atomic resolution.[16] DNA binding mediated by the helix-hairpin-helix domains of ERCC1 and XPF domains positions the heterodimer at the junction between double-stranded and single-stranded DNA.

Nucleotide excision repair (NER)

During nucleotide excision repair, several protein complexes cooperate to recognize damaged DNA and locally separate the DNA helix for a short distance on either side of the site of a site of DNA damage. The ERCC1–XPF nuclease incises the damaged DNA strand on the 5′ side of the lesion.[14] During NER, the ERCC1 protein interacts with the XPA protein to coordinate DNA and protein binding.

DNA double-strand break (DSB) repair

Mammalian cells with mutant ERCC1–XPF are moderately more sensitive than normal cells to agents (such as ionizing radiation) that cause double-stranded breaks in DNA.[18][19] Particular pathways of both homologous recombination repair and non-homologous end-joining rely on ERCC1-XPF function.[20][21] The relevant activity of ERCC1–XPF for both types of double-strand break repair is the ability to remove non-homologous 3′ single-stranded tails from DNA ends before rejoining. This activity is needed during a single-strand annealing subpathway of homologous recombination. Trimming of 3’ single-stranded tails is also needed in a mechanistically distinct subpathway of non-homologous end-joining, independent of the Ku proteins[22][19] Homologous integration of DNA, an important technique for genetic manipulation, is dependent on the function of ERCC1-XPF in the host cell.[23]

Mammalian cells carrying mutations in ERCC1 or XPF are especially sensitive to agents that cause DNA interstrand crosslinks (ICL)[24] Interstrand crosslinks block the progression of DNA replication, and structures at blocked DNA replication forks provide substrates for cleavage by ERCC1-XPF.[20][25] Incisions may be made on either side of the crosslink on one DNA strand to unhook the crosslink and initiate repair. Alternatively, a double-strand break may be made in the DNA near the ICL, and subsequent homologous recombination repair my involve ERCC1-XPF action. Although not the only nuclease involved, ERCC1–XPF is required for ICL repair during several phases of the cell cycle.[26][27]

Clinical significance

Xeroderma pigmentosum (XP)

Some individuals with the rare inherited syndrome xeroderma pigmentosum have mutations in ERCC4. These patients are classified as XP complementation group F (XP-F). Diagnostic features of XP are dry scaly skin, abnormal skin pigmentation in sun-exposed areas and severe photosensitivity, accompanied by a great than 1000-fold increased risk of developing UV radiation-induced skin cancers.[5]

Cockayne syndrome (CS)

Most XP-F patients show moderate symptoms of XP, but a few show additional symptoms of Cockayne syndrome.[28] Cockayne syndrome (CS) patients exhibit photosensitivity, and also exhibit developmental defects and neurological symptoms.[5][7]

Mutations in the ERCC4 gene can result in the very rare XF-E syndrome.[29] These patients have characteristics of XP and CS, as well as additional neurologic, hepatobiliary, musculoskeletal and hematopoietic symptoms.

Fanconi anemia

Several human patients with symptoms of Fanconi anemia (FA) have causative mutations in the ERCC4 gene. Fanconi anemia is a complex disease, involving major hematopoietic symptoms. A characteristic feature of FA is the hypersensitivity to agents that cause interstrand DNA crosslinks. FA patients with ERCC4 mutations have been classified as belonging to Fanconi anemia complementation group Q (FANCQ).[28][30]

ERCC4 (XPF) in the normal colon

Sequential sections of the same colon crypt with immunohistochemical staining (brown) showing normal high expression of DNA repair proteins PMS2 (A), ERCC1 (B) and ERCC4 (XPF) (C). This crypt is from the biopsy of a 58-year-old male patient who never had colonic neoplasia and the crypt has high expression of these DNA repair proteins in absorptive cell nuclei throughout most of the crypt. Note that PMS2 and ERCC4 (XPF) expression (in panels A and C) are each reduced or absent in the nuclei of cells at the top of the crypt and within the surface of the colonic lumen between crypts. Original image, also in a publication.[31]

ERCC4 (XPF) is normally expressed at a high level in cell nuclei within the inner surface of the colon (see image, panel C). The inner surface of the colon is lined with simple columnar epithelium with invaginations. The invaginations are called intestinal glands or colon crypts. The colon crypts are shaped like microscopic thick walled test tubes with a central hole down the length of the tube (the crypt lumen). Crypts are about 75 to 110 cells long. DNA repair, involving high expression of ERCC4 (XPF), PMS2 and ERCC1 proteins, appears to be very active in colon crypts in normal, non-neoplastic colon epithelium.

Cells are produced at the crypt base and migrate upward along the crypt axis before being shed into the colonic lumen days later.[32] There are 5 to 6 stem cells at the bases of the crypts.[32] There are about 10 million crypts along the inner surface of the average human colon.[31] If the stem cells at the base of the crypt express ERCC4 (XPF), generally all several thousand cells of the crypt will also express ERCC4 (XPF). This is indicated by the brown color seen by immunostaining of ERCC4 (XPF) in almost all the cells in the crypt in panel C of the image in this section. A similar expression of PMS2 and ERCC1 occurs in the thousands of cells in each normal colonic crypt.

The tissue section in the image shown here was also counterstained with hematoxylin to stain DNA in nuclei a blue-gray color. Nuclei of cells in the lamina propria, cells which are below and surround the epithelial crypts, largely show hematoxylin blue-gray color and have little expression of PMS2, ERCC1 or ERCC4 (XPF). In addition, cells at the very tops of the crypts stained for PMS2 (panel A) or ERCC4 (XPF) (panel C) have low levels of these DNA repair proteins, so that such cells show the blue-gray DNA stain as well.[31]

ERCC4 (XPF) deficiency in the colon epithelium adjacent to and within cancers

Sequential sections of a segment of colon epithelium near a colorectal cancer showing reduced or absent expression of PMS2 (A), ERCC1 (B) and ERCC4 (C) in the colon crypts. This tissue segment is from a histologically normal area of a colon resection of a male patient who had an adenocarcinoma in the sigmoid colon. For PMS2 (A), there is absent expression in cell nuclei of the crypt body, the crypt neck and the colonic lumen surface for all epithelial cells. For ERCC1 (B), there is reduced expression in most of the cell nuclei of the crypts, but there is high expression in cell nuclei at the neck of the crypts and in the adjacent colonic lumen surface. For ERCC4 (XPF) (C), there is absent expression in most of the cell nuclei of the crypts and in the colonic lumen in this area of tissue, but detectable expression at the neck of some crypts. The reductions or absence of expression of these DNA repair genes in this tissue appears to be due to epigenetic repression.[31] Original image, also in a publication.[31]

ERCC4 (XPF) is deficient in about 55% of colon cancers, and in about 40% of the colon crypts in the epithelium within 10 cm adjacent to the cancers (in the field defects from which the cancers likely arose).[31] When ERCC4 (XPF) is reduced in colonic crypts in a field defect, it is most often associated with reduced expression of DNA repair enzymes ERCC1 and PMS2 as well, as illustrated in the image in this section. Deficiencies in ERCC1 (XPF) in colon epithelium appear to be due to epigenetic repression.[31] A deficiency of ERCC4 (XPF) would lead to reduced repair of DNA damages. As indicated by Harper and Elledge,[33] defects in the ability to properly respond to and repair DNA damage underlie many forms of cancer. The frequent epigenetic reduction in ERCC4 (XPF) in field defects surrounding colon cancers as well as in cancers (along with epigenetic reductions in ERCC1 and PMS2) indicate that such reductions may often play a central role in progression to colon cancer.

Although epigenetic reductions in ERCC4 (XPF) expression are frequent in human colon cancers, mutations in ERCC4 (XPF) are rare in humans.[34] However, a mutation in ERCC4 (XPF) causes patients to be prone to skin cancer.[34] An inherited polymorphism in ERCC4 (XPF) appears to be important in breast cancer as well.[35] These infrequent mutational alterations underscore the likely role of ERCC4 (XPF) deficiency in progression to cancer.

Notes

References

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You can help expand this article with text translated from the corresponding article in Spanish. (April 2016) Click [show] for important translation instructions. Machine translation, like DeepL or Google Translate, is a useful starting point for translations, but translators must revise errors as necessary and confirm that the translation is accurate, rather than simply copy-pasting machine-translated text into the English Wikipedia. Consider adding a topic to this template: there are a...

Kritik terhadap Kekristenan memiliki sejarah panjang bermula sejak munculnya agama ini pada zaman Kekaisaran Romawi. Kritikus telah menyerang keyakinan Kristen dan ajaran-ajaran serta tindakan Kristen, dari perang Salib sampai terorisme modern. Argumen intelektual terhadap agama Kristen termasuk anggapan bahwa agama itu mengajarkan iman kekerasan, korupsi, takhayul, syirik, dan kefanatikan. Jadi gitu ya gaes ya. Alkitab Kritik Alkitab Kritik alkitab, khususnya kritik tinggi, mencakup berbagai...

 

American rapper and singer (born 1982) Dwayne Carter redirects here. For the racecar driver, see Duane Carter. Weezy redirects here. Not to be confused with Wheezy. Lil WayneLil Wayne in 2020BornDwayne Michael Carter Jr. (1982-09-27) September 27, 1982 (age 41)New Orleans, Louisiana, U.S.Other names Weezy Weezy F. Baby Tunechi President Carter EducationUniversity of PhoenixOccupations Rapper singer songwriter record executive entrepreneur Years active1995–presentWorksAlbumssi...

 

Vietnamese former standardized test This article does not cite any sources. Please help improve this article by adding citations to reliable sources. Unsourced material may be challenged and removed.Find sources: Universities and Colleges Selection Examination – news · newspapers · books · scholar · JSTOR (March 2023) (Learn how and when to remove this template message) This article is about the old Vietnamese admission test to colleges and universitie...

Apartment buildings and the small stage of Theatre Republique at Østerfælled Torv Østerfælled Torv (lit. Østerfælled Market) is a mixed-use development surrounding a public space by the same name in the former grounds of Østerfælled Barracks in the Østerbro district of Copenhagen, Denmark. It is a result of a redevelopment of the site in the 1990s which preserved many of the old buildings, now used for retail and commercial space as well as cultural facilities, combining them with ne...

 

2009 compilation album by Disney Channel starsDisney Channel PlaylistCompilation album by Disney Channel starsReleasedJune 9, 2009Recorded2005–2009Genre Pop pop rock teen pop LabelWalt DisneyDisney Channel stars chronology Disney Channel Holiday(2007) Disney Channel Playlist(2009) Disney Channel Holiday Playlist(2012) Professional ratingsReview scoresSourceRatingAllMusic[1] Disney Channel Playlist is a compilation album of music featured in Disney Channel Original Series, as...

 

Human settlement in WalesMariandyrysMariandyrysLocation within AngleseyOS grid referenceSH 6047 8114• Cardiff132.2 mi (212.8 km)• London208.5 mi (335.5 km)CommunityLlangoedPrincipal areaAngleseyCountryWalesSovereign stateUnited KingdomPost townBiwmaresPoliceNorth WalesFireNorth WalesAmbulanceWelsh UK ParliamentYnys MônSenedd Cymru – Welsh ParliamentYnys Môn List of places UK Wales Anglesey 53°18′32″N 4°05′44″W / ...

History of Filipino women writers This article is written like a personal reflection, personal essay, or argumentative essay that states a Wikipedia editor's personal feelings or presents an original argument about a topic. Please help improve it by rewriting it in an encyclopedic style. (November 2022) (Learn how and when to remove this template message) Part of a series onWomen in society Society Women's history (legal rights) Woman Animal advocacy Business Female entrepreneurs Gender ...

 

Ada usul agar artikel ini digabungkan ke SMP Negeri 1 Probolinggo. (Diskusikan) Artikel ini perlu diwikifikasi agar memenuhi standar kualitas Wikipedia. Anda dapat memberikan bantuan berupa penambahan pranala dalam, atau dengan merapikan tata letak dari artikel ini. Untuk keterangan lebih lanjut, klik [tampil] di bagian kanan. Mengganti markah HTML dengan markah wiki bila dimungkinkan. Tambahkan pranala wiki. Bila dirasa perlu, buatlah pautan ke artikel wiki lainnya dengan cara menambahkan [[...

 

Amari'i BellDatos personalesNombre completo Amari'i Kyren BellNacimiento Burton upon Trent, Reino Unido5 de mayo de 1994 (29 años)Nacionalidad(es) Británica JamaicanaAltura 1,80 m (5′ 11″)Carrera deportivaDeporte FútbolClub profesionalDebut deportivo 2014(Birmingham City F. C.)Club Luton Town F. C.Liga Premier LeaguePosición DefensaDorsal(es) 29Selección nacionalSelección JAM JamaicaDebut 25 de marzo de 2021Dorsal(es) 4Part. (goles) 17 (1)Trayectoria Birming...

Use of displays by organisms to signal for selective advantage Red deer stag advertises its size honestly by roaring in the breeding season, reducing the need to fight. Advertising in biology means the use of displays by organisms such as animals and plants to signal their presence for some evolutionary reason. Such signalling may be honest, used to attract other organisms, as when flowers use bright colours, patterns, and scent to attract pollinators such as bees; or, again honestly, to warn...

 

Israeli film director Noam Murroנועם מורוNoam Murro at the 2013 San Diego Comic-ConBorn (1961-08-16) August 16, 1961 (age 62)Jerusalem, IsraelNationalityIsraeliAlma materBezalel Academy of Art and DesignOccupation(s)Film director, film producerYears active2005–present Noam Murro (Hebrew: נועם מורו; born (1961-08-16)August 16, 1961) is an Israeli film director and film producer. He is best known for directing the films Smart People, 300: Rise of an Empire, and ...

 

Strategi Solo vs Squad di Free Fire: Cara Menang Mudah!