The 2006–07 Jordan FA Cup is the 27th edition of the Jordan FA Cup since its establishment in 1980. It started on 5 September 2006 and ended on 14 June 2007. Shabab Al-Ordon. The winner of the competition will earn a spot in the 2008 AFC Cup.
Shabab Al-Ordon won their second title after a 2–0 win over Al-Faisaly in the final on 14 June 2007.
In this round, each tie was played as a single match. Extra time and penalty shoot-out were used to decide the winner if necessary . The six winners of this round advanced to the round of 16 to join the 10 direct entrants.