The 1996 season was the fifth full year of competitive football in the Baltic country as an independent nation. After having a poor run in 1995 (twelve defeats in twelve games) the Estonia national football team started in the qualifying tournament for the 1998 FIFA World Cup in France. The team had a new coach: Teitur Thordarson from Iceland.
Estonia played the non-FIFA Basque Country team on 26 December 1996; this did not contribute to ranking points or individual cap totals.