TRIB1

TRIB1
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 5CEM, 5CEK, 5IGO, 5IGQ
Identifiers
Aliases	TRIB1, C8FW, GIG-2, GIG2, SKIP1, TRB-1, TRB1, tribbles pseudokinase 1
External IDs	OMIM: 609461; MGI: 2443397; HomoloGene: 75216; GeneCards: TRIB1; OMA:TRIB1 - orthologs
Gene location (Human) Chr. Chromosome 8 (human)[1] Band 8q24.13 Start 125,430,358 bp[1] End 125,438,403 bp[1]
Gene location (Mouse) Chr. Chromosome 15 (mouse)[2] Band 15|15 D1 Start 59,520,199 bp[2] End 59,528,948 bp[2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in mucosa of urinary bladder mucosa of sigmoid colon visceral pleura gallbladder mucosa of paranasal sinus tail of epididymis parotid gland Skeletal muscle tissue of rectus abdominis kidney tubule thyroid gland Top expressed in granulocyte retinal pigment epithelium parotid gland lacrimal gland tail of embryo genital tubercle islet of Langerhans left colon lens lip More reference expression data BioGPS More reference expression data
Gene ontology Molecular function protein kinase activity ubiquitin-protein transferase regulator activity protein kinase inhibitor activity transcription factor binding protein binding mitogen-activated protein kinase kinase binding ATP binding ubiquitin protein ligase binding Cellular component cytoplasm nucleus Biological process negative regulation of smooth muscle cell proliferation negative regulation of protein kinase activity positive regulation of macrophage differentiation negative regulation of smooth muscle cell migration negative regulation of DNA-binding transcription factor activity negative regulation of neutrophil differentiation negative regulation of lipopolysaccharide-mediated signaling pathway protein phosphorylation JNK cascade response to lipopolysaccharide positive regulation of eosinophil differentiation regulation of MAP kinase activity positive regulation of proteasomal ubiquitin-dependent protein catabolic process Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 10221 211770 Ensembl ENSG00000173334 ENSMUSG00000032501 UniProt Q96RU8 Q8K4K4 RefSeq (mRNA) NM_001282985 NM_025195 NM_144549 RefSeq (protein) NP_001269914 NP_079471 NP_653132 Location (UCSC) Chr 8: 125.43 – 125.44 Mb Chr 15: 59.52 – 59.53 Mb PubMed search [3] [4]
Wikidata
View/Edit Human View/Edit Mouse

Tribbles homolog 1 is a protein kinase that in humans is encoded by the TRIB1 gene.^[5][6][7] Orthologs of this protein pseudokinase (pseudoenzyme) can be found almost ubiquitously throughout the animal kingdom.^[8] It exerts its biological functions through binding to signalling proteins of the MAPKK level of the MAPK pathway, therefore eliciting a regulatory role in the function of this pathway which mediates proliferation, apoptosis and differentiation in cells. Tribbles-1 is encoded by the trib1 gene, which in humans can be found on chromosome 8 at position 24.13 on the longest arm (q). Recent crystal structures show that Tribbles 1 has an unusual 3D structure, containing a 'broken' C-helix region, a binding site for ubiquitinated substrates such as C/EBPalpha and a key regulatory C-tail region.^[9] Like TRIB2 and TRIB3, TRIB1 has recently been considered as a potential allosteric drug target.^[10]

Function

Tribbles-1 is one of three members of the Tribbles subfamily, which is a part of the CAMK Ser/Thr protein kinase family, of the protein kinase superfamily. The Tribbles subfamily is one of the pseudokinases, meaning that while expressing putative kinase regions in its structure, it is non-catalytic. The Tribbles subfamily lacks a functional ATP binding pocket, and therefore cannot phosphorylate its substrates; instead, Tribbles proteins function as scaffold proteins, which bind their substrates to localize them to or from their function ^[8]

Expression of Tribbles-1 is highly variable, constantly changing with respect to time and cell-type,^[11] which suggests a large amount of regulation that exists in the cell. The protein's primary structure contains a PEST region, indicative of proteins that are highly susceptible to degradation in the cell; Tribbles-1 plays a role in regulating its own expression by binding to its substrate, which not only produces its function on the MAPK pathway, but also works to protect it from degradation whilst binding. This, in part, creates a positive feedback loop in the function of Tribbles-1, as the function of Tribbles-1 directly aids in the increase of the amount of it. As positive feedback loops are often seen throughout biology in circumstances that require the alleviation of an external stimulus, the positive feedback loop exhibited by Tribbles-1 suggests that it plays a functional role in cell response.

References

1. GRCh38: Ensembl release 89: ENSG00000173334 – Ensembl, May 2017
2. GRCm38: Ensembl release 89: ENSMUSG00000032501 – Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Wilkin F, Suarez-Huerta N, Robaye B, Peetermans J, Libert F, Dumont JE, Maenhaut C (September 1997). "Characterization of a phosphoprotein whose mRNA is regulated by the mitogenic pathways in dog thyroid cells". European Journal of Biochemistry. 248 (3): 660–8. doi:10.1111/j.1432-1033.1997.t01-1-00660.x. PMID 9342215.
6. Hegedus Z, Czibula A, Kiss-Toth E (July 2006). "Tribbles: novel regulators of cell function; evolutionary aspects". Cellular and Molecular Life Sciences. 63 (14): 1632–41. doi:10.1007/s00018-006-6007-9. PMC 11136108. PMID 16715410. S2CID 24556931.
7. "Entrez Gene: TRIB1 tribbles homolog 1 (Drosophila)".
8. Eyers PA, Keeshan K, Kannan N (April 2017). "Tribbles in the 21st Century: The Evolving Roles of Tribbles Pseudokinases in Biology and Disease". Trends in Cell Biology. 27 (4): 284–298. doi:10.1016/j.tcb.2016.11.002. PMC 5382568. PMID 27908682.
9. Murphy JM, Nakatani Y, Jamieson SA, Dai W, Lucet IS, Mace PD (November 2015). "Molecular Mechanism of CCAAT-Enhancer Binding Protein Recruitment by the TRIB1 Pseudokinase". Structure. 23 (11): 2111–21. doi:10.1016/j.str.2015.08.017. PMID 26455797.
10. Foulkes DM, Byrne DP, Bailey FP, Eyers PA (October 2015). "Tribbles pseudokinases: novel targets for chemical biology and drug discovery?". Biochemical Society Transactions. 43 (5): 1095–103. doi:10.1042/BST20150109. PMID 26517930.
11. Sung HY, Francis SE, Crossman DC, Kiss-Toth E (April 2006). "Regulation of expression and signalling modulator function of mammalian tribbles is cell-type specific". Immunology Letters. 104 (1–2): 171–7. doi:10.1016/j.imlet.2005.11.010. PMID 16364454.

Further reading

• Tang K, Finley RL, Nie D, Honn KV (March 2000). "Identification of 12-lipoxygenase interaction with cellular proteins by yeast two-hybrid screening". Biochemistry. 39 (12): 3185–91. doi:10.1021/bi992664v. PMID 10727209.
• Wu M, Xu LG, Zhai Z, Shu HB (July 2003). "SINK is a p65-interacting negative regulator of NF-kappaB-dependent transcription". The Journal of Biological Chemistry. 278 (29): 27072–9. doi:10.1074/jbc.M209814200. PMID 12736262.
• Kiss-Toth E, Bagstaff SM, Sung HY, Jozsa V, Dempsey C, Caunt JC, et al. (October 2004). "Human tribbles, a protein family controlling mitogen-activated protein kinase cascades". The Journal of Biological Chemistry. 279 (41): 42703–8. doi:10.1074/jbc.M407732200. hdl:2262/33449. PMID 15299019.
• Xu C, Zhang J, Huang X, Sun J, Xu Y, Tang Y, et al. (June 2006). "Solution structure of human peptidyl prolyl isomerase-like protein 1 and insights into its interaction with SKIP". The Journal of Biological Chemistry. 281 (23): 15900–8. doi:10.1074/jbc.M511155200. PMID 16595688.
• Sung HY, Guan H, Czibula A, King AR, Eder K, Heath E, et al. (June 2007). "Human tribbles-1 controls proliferation and chemotaxis of smooth muscle cells via MAPK signaling pathways". The Journal of Biological Chemistry. 282 (25): 18379–87. doi:10.1074/jbc.M610792200. PMC 2366084. PMID 17452330.

External links

• TRIB1 human gene location in the UCSC Genome Browser.
• TRIB1 human gene details in the UCSC Genome Browser.