In 1983, Natynczyk assumed duties as a Squadron Commander at the Royal Military College of Canada in Kingston, Ontario. In 1986, he commenced a five-year regimental tour in Petawawa, serving in several staff and squadron command appointments; this tour included six months of UN peacekeeping duties in Cyprus. On completion of Canadian Forces Command and Staff College, he served on the Army Staff in Saint-Hubert, Quebec.[9]
In May 1994, Natynczyk embarked upon a year-long tour with the United Nations in the former Yugoslavia as Sector South-West Chief of Operations in Bosnia and Herzegovina within HQ 7 (UK) Armoured Brigade, then as the Chief of Land Operations, UNPROFOR HQ in Zagreb, Croatia.[9] In June 1995, Natynczyk was assigned to the Vice Chief of the Defence Staff within National Defence HQ in Ottawa, Ontario. He then commanded his regiment for two years, leading the Dragoons during domestic operations in the Ottawa region during the 1998 ice storm.[9] Natynczyk returned to Bosnia in 1998 as the Canadian Contingent Commander. On his return to Ottawa in March 1999, he was appointed J3 Plans and Operations during the period of deployments to Kosovo, Bosnia, East Timor and Eritrea.[9]
Natynczyk attended the U.S. Army War College, and was subsequently appointed Deputy Commanding General, III Corps and Fort Hood. In January 2004, he deployed with III Corps to Baghdad, Iraq, serving first as the Deputy Director of Strategy, Policy and Plans, and subsequently as the Deputy Commanding General of the Multi-National Corps – Iraq during Operation Iraqi Freedom.[9][10] Natynczyk led the Corps' 35,000 soldiers, consisting of 10 separate brigades, stationed throughout the Iraq Theatre of Operations.[3][11] He was later awarded the Meritorious Service Cross specifically for his combat efforts in Operation Iraqi Freedom January 2004 to January 2005.[12]
Upon his return to Canada, he assumed command of the Land Force Doctrine and Training System. He was subsequently appointed Chief of Transformation, where he was responsible for implementation of the force restructuring and the enabling processes and policies.[9]
On June 6, 2008, Prime Minister Stephen Harper appointed Natynczyk as the next Chief of the Defence Staff (CDS), replacing retiring General Rick Hillier.[13] Natynczyk was promoted to general, and installed as CDS on July 2, 2008. General Natynczyk transferred his appointment at a change of command ceremony in 2012.
Natynczyk retired from the Canadian Armed Forces in December 2012 to take on public service, after transferring control of the defence staff to his successor, RCAF General Thomas Lawson, just 2 months earlier.[15]
Natynczyk retired from public service in 2021, receiving accolades from Prime Minister Justin Trudeau for his lifetime dedication and service to Canadians.[19]
^"Governor General announces awarding of Meritorious Service Decorations". Governor General of Canada; Media release. January 24, 2006. Retrieved May 15, 2009. MGen Natynczyk is recognized for his outstanding leadership and professionalism while deployed as Deputy Commanding General of the Multi-National Corps during Operation IRAQI FREEDOM. From January 2004 to January 2005, MGen Natynczyk led the Corps' 10 separate brigades, consisting of more than 35,000 soldiers stationed throughout the Iraq Theatre of Operations. He also oversaw planning and execution of all Corps level combat support and combat service support operations. His pivotal role in the development of numerous plans and operations resulted in a tremendous contribution by the Multi-National Corps to Operation Iraqi Freedom, and has brought great credit to the Canadian Forces and to Canada.
^Canadian Department of Veterans Affairs (April 15, 2015). "Deputy Minister – Department Officials". Canadian Department of Veterans Affairs. Retrieved March 20, 2017.