User:Sedmic

For rendering proteins in Pymol, I usually use the following settings:

Significant Contributions

Pymol settings

For rendering proteins in Pymol, I usually use the following settings:

  • color lightblue, (name CA)
  • color red, ss h
  • color blue, ss s
  • color wheat, ss l+
  • viewport 600,450
  • set ray_trace_frames = 0
  • set cache_frames = 1
  • set cartoon_fancy_helices = 1

Animating proteins is useful to gain an idea of the 3D structure. To render the movie of the protein, I then add:

  • mset 1 x50
  • util.mroll(1,50,1)
  • mplay

Then, to save the movie as a series of sequential png files:

  • mpng mov

Finally, I need to convert the png to an animated GIF using the Linux convert command:

  • convert -loop 0 mov*.png out.gif

Work in progress

Content Disclaimer

Informasi ini disarikan dari Wikipedia dan disajikan kembali untuk tujuan edukasi. Konten tersedia di bawah lisensi CC BY-SA 3.0. Kami tidak bertanggung jawab atas ketidakakuratan data yang bersumber dari kontribusi publik tersebut.

  1. The information displayed on this website is sourced in part or in whole from Wikipedia and has been adapted for the purpose of restating it. We strive to provide accurate and relevant information, however:
  2. There is no guarantee of absolute accuracy. Wikipedia is an open, collaborative project that can be edited by anyone, so information is subject to change.
  3. It is not intended to constitute professional advice. The content displayed is for informational and educational purposes only. For important decisions (e.g., medical, legal, or financial), please consult a professional.
  4. Content copyright. Wikipedia is licensed under the Creative Commons Attribution-ShareAlike License (CC BY-SA). This means that content may be reused with appropriate attribution and shared under a similar license.
  5. Responsible use. Any risk arising from the use of information from this website is entirely the responsibility of the user.