Pseudo K-tuple nucleotide composition

The Pseudo K-tuple nucleotide composition or PseKNC, was extended from Chou's Pseudo amino acid composition (PseAAC).[1] Both PseAAC and PseKNC are of vector descriptor, but the former represents protein or peptide sequences while the latter represents DNA or RNA sequences.

To avoid completely losing the sequence-order information for protein and peptide sequences, the PseAAC[1] was proposed by Kuo-Chen Chou. To address the problem of DNA and RNA sequences, the pseudo K-tuple nucleotide composition or PseKNC was proposed.[2][3][4] For the convenience scientific community, a freely available web server called PseKNC[2] and an open source package called PseKNC-General[3] were developed in 2013 and 2014, respectively, that could convert large-scale sequence datasets to pseudo nucleotide compositions with numerous choices of physicochemical property combinations. PseKNC-General can generate several modes of pseudo nucleotide compositions, including conventional k-tuple nucleotide compositions, Moreau–Broto autocorrelation coefficient, Moran autocorrelation coefficient, Geary autocorrelation coefficient, Type I PseKNC and Type II PseKNC.

Like PseAAC in computational proteomics and proteome analysis, PseKNC has also been increasingly used in computational genomics and performing various genome analyses.

References

  1. ^ a b Chou, Kuo-Chen (2001). "Prediction of protein cellular attributes using pseudo-amino acid composition". Proteins: Structure, Function, and Genetics. 43 (3): 246–55. doi:10.1002/prot.1035. PMID 11288174. S2CID 28406797.
  2. ^ a b Chen, Wei; Lei, Tian-Yu; Jin, Dian-Chuan; Lin, Hao; Chou, Kuo-Chen (2014). "PseKNC: A flexible web server for generating pseudo K-tuple nucleotide composition". Analytical Biochemistry. 456: 53–60. doi:10.1016/j.ab.2014.04.001. PMID 24732113.
  3. ^ a b Chen, Wei; Zhang, Xitong; Brooker, Jordan; Lin, Hao; Zhang, Liqing; Chou, Kuo-Chen (2015). "PseKNC-General: A cross-platform package for generating various modes of pseudo nucleotide compositions". Bioinformatics. 31 (1): 119–20. doi:10.1093/bioinformatics/btu602. PMID 25231908.
  4. ^ Chen, Wei; Lin, Hao; Chou, Kuo-Chen (2015). "Pseudo nucleotide composition or PseKNC: An effective formulation for analyzing genomic sequences". Molecular BioSystems. 11 (10): 2620–34. doi:10.1039/c5mb00155b. PMID 26099739.

Read other articles:

Sweet Home (1989 film)

1989 Japanese horror film Sweet HomeJapanese theatrical film posterJapanese nameKanjiスウィートホームTranscriptionsRevised HepburnSuwīto hōmu Directed byKiyoshi KurosawaWritten byKiyoshi Kurosawa[1]Produced byJuzo ItamiShogo Hosoya[1]Starring Nobuko Miyamoto Shingo Yamashiro Nokko Fukumi Kuroda Ichiro Furutachi CinematographyYonezo Maeda[1]Music byMasaya Matsuura[1]ProductioncompanyItami Production[1]Distributed byTohoRelease date 21 Janu...

 

Buttstädt

Dieser Artikel behandelt den Ort in Thüringen. Siehe auch: Buttstedt. Wappen Deutschlandkarte 51.12138888888911.416666666667201Koordinaten: 51° 7′ N, 11° 25′ O Basisdaten Bundesland: Thüringen Landkreis: Sömmerda Höhe: 201 m ü. NHN Fläche: 104,8 km2 Einwohner: 6651 (31. Dez. 2022)[1] Bevölkerungsdichte: 63 Einwohner je km2 Postleitzahl: 99628 Vorwahl: 036373 Kfz-Kennzeichen: SÖM Gemeindeschlüssel: 16 0 68&#...

 

Слюсаренко Володимир Олексійович

Володимир Олексійович Слюсаренко  Генерал від інфантеріїгенеральний бунчужний Загальна інформаціяНародження 2 травня 1857(1857-05-02)Смерть 22 травня 1933(1933-05-22) (76 років)м. Бела-Црква,  СербіяAlma Mater Перший кадетський корпус (Санкт-Петербург)Військова службаПриналежність Рос

Rawalumbu, Bekasi

RawalumbuKecamatanNegara IndonesiaProvinsiJawa BaratKotaBekasiPemerintahan • CamatDian Herdiana, A.P., M.Si.Populasi • Total227.198 jiwa (2.014)[1] jiwaKode Kemendagri32.75.05 Kode BPS3275041 Desa/kelurahan4 Rawalumbu adalah sebuah kecamatan yang terletak di Kota Bekasi, Provinsi Jawa Barat, Indonesia. Sejarah Sejarah pembentukan Kecamatan Rawalumbu adalah bagian dari Kecamatan Bekasi Timur, namun seiring dengan berlakunya UU Nomor 22 Tahun 1999 Tentang Ot...

 

深田恭子

「フカキョン」はこの項目へ転送されています。 『サイボーグクロちゃん』に登場するキャラクターについては「サイボーグクロちゃんの登場人物」をご覧ください。 『サラブレッドと呼ばないで』に登場するキャラクターの通称については「サラブレッドと呼ばないで」をご覧ください。 ふかだ きょうこ深田 恭子 2017年の「新4K8K衛星放送開始1年前セレモニー」にて

 

الهجوم الأوكراني المضاد 2023

الهجوم الأوكراني المضاد 2023 جزء من الغزو الروسي لأوكرانيا 2022 معلومات عامة التاريخ 4 يونيو 2023 – للآن(5 شهور، و4 أسابيع، و1 يوم) البلد أوكرانيا  الموقع جنوب أوكرانيا [الإنجليزية] (أوبلاست خيرسون، أوبلاست زاباروجيا) وشرق أوكرانيا (أوبلاست دونيتسك، أوبلاست لوهانسك) النت

Hyapatia Lee

American adult film actress Some of this article's listed sources may not be reliable. Please help this article by looking for better, more reliable sources. Unreliable citations may be challenged or deleted. (September 2021) (Learn how and when to remove this template message) Hyapatia LeeBornVicki Lynch[1]Haughville, Indianapolis, Indiana, United States[1]Spouse(s)Jack[1]Bud Lee (19??–1993; divorced)[1]Children3 Vicki Lynch, known professionally as Hyapatia...

 

Cohesion (computer science)

Degree to which elements within a module belong together In computer programming, cohesion refers to the degree to which the elements inside a module belong together.[1] In one sense, it is a measure of the strength of relationship between the methods and data of a class and some unifying purpose or concept served by that class. In another sense, it is a measure of the strength of relationship between the class's methods and data themselves. Cohesion is an ordinal type of measurement ...

 

Malone Golf Club

Malone Golf ClubClub informationLocation near BelfastShow map of Greater BelfastMalone Golf Club (Northern Ireland)Show map of Northern IrelandMalone Golf Club (island of Ireland)Show map of island of IrelandMalone Golf Club (the United Kingdom)Show map of the United KingdomCoordinates54°32′19″N 5°58′42″W / 54.538681°N 5.978420°W / 54.538681; -5.978420LocationDunmurry, County Antrim, Northern IrelandEstablished1895, 128 years agoTypePrivateTotal holes27Even...

NOTA (film)

2018 film directed by Anand Shankar For the Malaysian film, see Note (film). NOTAPosterDirected byAnand ShankarWritten byShan KaruppusamyStory byVettaattam by Shan KaruppusamyProduced byK. E. Gnanavel RajaStarringVijay DevarakondaMehreen PirzadaCinematographySanthana Krishnan RavichandranEdited byRaymond Derrick CrastaMusic bySam C. S.ProductioncompanyStudio GreenRelease date 5 October 2018 (2018-10-05)[1] Running time153 minutesCountryIndiaLanguageTamilBox officeest. ...

 

أم قيس (إربد)

32°39′N 35°41′E / 32.650°N 35.683°E / 32.650; 35.683 أم قيس   الإحداثيات 32°39′14″N 35°41′19″E / 32.653888888889°N 35.688611111111°E / 32.653888888889; 35.688611111111  تقسيم إداري  البلد الأردن[1]  التقسيم الأعلى محافظة إربد  خصائص جغرافية ارتفاع 378 متر  رمز جيونيمز 246202  تعديل مصدر...

 

Manlius Boethius

Consular diptych of Boethius Nar. Manlius Boethius (died circa 487) was a Roman and Italian aristocrat, who was appointed consul for 487. He was likely the father of the Roman philosopher, Boethius. Life He was probably the son of Boethius, the praetorian prefect of Italy, who was put to death by Emperor Valentinian III in 454, and probably the father of the famous philosopher Boethius; if this identification is correct, he died not long after 487, for Boethius is known to have been orphaned ...

Starlux Airlines

Taiwanese airline This article is about the current Taiwan-based airline company. For the defunct French airline, see XL Airways France. For the defunct Alaska-based airline, see Star Air Service. STARLUX Airlines星宇航空 IATA ICAO Callsign JX SJX STARWALKER Founded2 May 2018; 5 years ago (2018-05-02)Commenced operations23 January 2020; 3 years ago (2020-01-23)AOC #SJX-01[1]HubsTaiwan Taoyuan International AirportFrequent-flyer programCOSMI...

 

Клеоник Амасийский

В Википедии есть статьи о других людях с именем Клеоник. У этого термина существуют и другие значения, см. Амасийский.Клеоник Амасийский Родился III век Умер 308Амасья, Турция В лике святой День памяти 3 марта Клео́ник Ама́сийский — христианский святой, мученик, который б...

 

All-America Football Conference

Professional American football league operating from 1946–1949 All-America Football ConferenceSportAmerican footballFounded1944Inaugural season1946Ceased1949No. of teams8CountryUnited StatesLastchampion(s)Cleveland Browns (4) The All-America Football Conference (AAFC) was a major professional American football league that challenged the established National Football League (NFL) from 1946 to 1949. One of the NFL's most formidable challengers, the AAFC attracted many of the nation's best pla...

Festival Nebuta Aomori

Nebuta Festival Nebuta Aomori (青森ねぶた祭code: ja is deprecated , Aomori Nebuta Matsuri) atau Aomori Nebuta (青森ねぶたcode: ja is deprecated ) adalah festival musim panas dari 2 Agustus hingga 7 Agustus di kota Aomori, Prefektur Aomori. Festival ini termasuk salah satu acara menyambut Tanabata yang dilakukan di wilayah Tohoku. Nebuta adalah lentera ukuran raksasa yang dibuat dari kerangka kayu berlapis washi yang umumnya berbentuk boneka pemeran kabuki atau hewan. Nebuta diusung...

 

Waterpolo en los XX Juegos Centroamericanos y del Caribe

Artículo principal: XX Juegos Centroamericanos y del Caribe Waterpolo en Cartagena 2006 XX Juegos Centroamericanos y del Caribe Localización Cartagena ColombiaParticipantes • Países • Deportistas 6 paísesEventos 2CeremoniasApertura 23 de julio de 2006Clausura 29 de julio de 2006[editar datos en Wikidata] Se detallan los resultados de las competiciones deportivas para la especialidad de Waterpolo en los XX Juegos Centroamericanos y del Carib...

 

Pandemi Covid-19 di Guernsey

Pandemi COVID-19 di Bailiwick GuernseyPeta total kasus terkonfirmasi menurut yurisdiksi[note 1] pada 5 Desember 2020   100–299 kasus terkonfirmasi   10–99 kasus terkonfirmasi   1–9 kasus terkonfirmasi   Tak ada kasus terkonfirmasi atau tak ada dataPeta kematian menurut yurisdiksi[note 1] pada 5 Desember 2020   10–19 kematian   1–9 kematian   Tak ada kematian atau taka da dataPenyakitCOVID-19Galur v...

Châtenay-Malabry

You can help expand this article with text translated from the corresponding article in French. (July 2014) Click [show] for important translation instructions. View a machine-translated version of the French article. Machine translation, like DeepL or Google Translate, is a useful starting point for translations, but translators must revise errors as necessary and confirm that the translation is accurate, rather than simply copy-pasting machine-translated text into the English Wikipedia...

 

Barnside

Hamlet near Hepworth in West Yorkshire, England Human settlement in EnglandBarnsideBarnside hamlet, HepworthBarnsideLocation within West YorkshireMetropolitan boroughKirkleesDistrictWest YorkshireShire countyYorkshireMetropolitan countyWest YorkshireRegionYorkshire and the HumberCountryEnglandSovereign stateUnited KingdomPost townHolmfirthPostcode districtHD9Dialling code01484PoliceWest YorkshireFireWest YorkshireAmbulanceYorkshire UK ParliamentColne Valley ...

 

Strategi Solo vs Squad di Free Fire: Cara Menang Mudah!