During his first season, Columbia ended a 16-game Ivy League losing streak with a 21–14 victory over Cornell. A 22–21 season-ending win at Brown gave the Lions their first consecutive league victories since 2003.
The Light Blue finished Wilson's inaugural campaign with those two league wins and a 5–5 record overall. It was the first time in a decade that the Lions had finished at .500, and it gave Wilson the highest career winning percentage among Columbia coaches since Charlie Crowley led the team to a 26–16–4 record from 1925 to 1929.
Wilson finished his six seasons at Columbia with a record of 10–32 in Ivy League play and 17–43 overall.
He was relieved of his position by Columbia Athletic Director Diane Murphy on Sunday, November 20, 2011, following a 1–9 season.[3]
In September 2015, Rutgers University officials suspended Flood for three games after an investigation into whether he improperly contacted a professor regarding a player's academic status and athletic eligibility. During Flood's suspension, Wilson filled in as interim head coach.[4][5] Playing in State College, Pennsylvania, on September 19, Rutgers was trounced by the Penn State Nittany Lions, losing by a score of 28–3. The following week, on September 26, Rutgers defeated the visiting Kansas Jayhawks, 27–14. On October 10, Rutgers was defeated at home by Michigan State, 31–24, in his final game as interim head coach.
Wilson took responsibility for the quarterback spiking the ball on a fourth down play against Michigan State in 2015. Although he did not instruct the quarterback to do so.
Minnesota
During the 2020 season, Wilson stepped in as interim-Offensive Line coach for the Gopher's game against Purdue University. Minnesota went on to win the game 34-31.