Dune: Serial publication: Analog, December 1963 – February 1964 (Part I, as "Dune World"), and January – May 1965 (Parts II and III, as "The Prophet of Dune"). First edition: Philadelphia: Chilton Books, 1965.
Dune Messiah: Serial publication: Galaxy, July – November 1969. First edition: New York: G.P. Putnam's Sons, 1969.
Children of Dune: Serial publication: Analog, January – April 1976, "Children of Dune". First edition: New York: G.P. Putnam's Sons, 1976.
Whipping Star: Serial publication: Worlds of If, January – April 1970. First edition: New York: G.P. Putnam's Sons, 1970.
The Dosadi Experiment: Serial publication: Galaxy, May – August 1977 "The Dosadi Experiment". First edition: New York: G.P. Putnam's Sons, 1977.
Standalone novels
The Dragon in the Sea: Serial publication: Astounding, November 1955 – January 1956. First edition: New York: Doubleday, 1956. Also titled Under Pressure and 21st Century Sub.
The Green Brain: Serial publication: Amazing, March 1965, under the title "Greenslaves." First edition: New York: Ace, 1966.
The Eyes of Heisenberg: Serial publication: Galaxy, June – August 1966, as "Heisenberg's Eyes." First edition: New York: Berkeley, 1966.
The Heaven Makers: Serial publication: Amazing, April – June 1967. First edition: New York: Avon, 1968
The Santaroga Barrier: Serial publication: Amazing, October 1967 – February 1968. First edition: New York: Berkeley, 1968
"Science Fiction and a World Crisis" in Science Fiction: Today and Tomorrow, ed. Reginald Bretnor. New York: Harper and Row, 1974.
"Men on Other Planets", The Craft of Science Fiction, ed. Reginald Bretnor. New York: Harper and Row, 1976.
"The Sky is Going to Fall", in Seriatim: The Journal of Ecotopia, No. 2, Spring 1977, pp. 88 – 89. (slightly different article appeared in The San Francisco Examiner "Overview" column, July 4, 1976.)
"The ConSentiency and How it Got That Way", Galaxy, May 1977 (may be considered as a fiction story and therefore in the "Original Single Story" section)
"Flying Saucers: Fact or Farce?", San Francisco Sunday Examiner & Chronicle, people supplement, October 20, 1963.
"2068 A.D.", San Francisco Sunday Examiner & Chronicle, California Living section, July 28, 1968.
"We're Losing the Smog War" (part 1). San Francisco Sunday Examiner & Chronicle, California Living section, December 1, 1968.
"Lying to Ourselves About Air" (part 2). San Francisco Sunday Examiner & Chronicle, California Living section, December 8, 1968.
"You Can Go Home Again." San Francisco Sunday Examiner & Chronicle, California Living section, March 29, 1970. (Refers to some of Herbert's childhood experiences in the Northwest)
"Overview," San Francisco Sunday Examiner & Chronicle, July 4, 1976.
"New Lifestyle to Fit a World of Shortages." San Francisco Sunday Examiner & Chronicle, March 25, 1977
Other publications
Poetry
"Carthage: Reflections of a Martian", Mars, We Love You, ed. Jane Hipolito and Willis E. McNelly. New York: Doubleday, 1971.