Upon returning to Portugal, Lopes joined António Folha's staff at Portimonense S.C., initially as a scout. In January 2019, he was named manager of the club's under-23 squad, after Luís Boa Morte left.[1]
On 19 January 2020, Lopes was appointed interim manager of Portimonense's main squad, after Folha was sacked.[2] He managed the club for three matches before returning to his previous role.
On 7 September 2020, Lopes was named manager of Welsh club Cefn Druids.[3] He was dismissed the following 10 March,[4] and took over Bahia's under-23 side on 14 June 2021.[5]