The league was split into two separate divisions, the Premier Division and the First Division. This season saw a reduction in the number of clubs from 26 to 20, due to the departure of nine clubs who left to join the inaugural Lowland Football League, although additional reserve teams joined the league to boost numbers.
The 2013–14 Premier Division saw a reduction in the number of clubs from twelve to ten, due to the departure of seven clubs to the newly-formed Lowland Football League. As a result, Edinburgh University and Tynecastle retained their place in the division despite finishing in the previous season's relegation places. Three clubs were promoted from the First Division and two reserve teams also entered the division.
The First Division also saw a reduction in the number of clubs, from fourteen to ten. This was due to the departure of two clubs to the newly-formed Lowland Football League and promotion of additional clubs to rebalance the number of clubs with the Premier Division.
Teams
The following teams changed division after the 2012–13 season.