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Slovenian Third League
Season	1998–99
Champions	Livar (Centre); Črenšovci (East); Rogoza (North); Korte (West);
Relegated	Britof; Sava Kranj; Moravče; Lakoš; Panonija Gaberje; Brunšvik; Kungota; Bilje; Koštabona;
	← 1997–98 1999–2000 →

The 1998–99 Slovenian Third League was the seventh season of the Slovenian Third League, the third highest level in the Slovenian football system.

League standings

Pos	Team	Pld	W	D	L	GF	GA	GD	Pts	Promotion or relegation
1	Livar (C, P)	26	21	4	1	82	28	+54	67	Promotion to Slovenian Second League
2	Kolpa	26	15	6	5	65	34	+31	51
3	Svoboda	26	14	5	7	78	50	+28	47
4	Arne Tabor 69	26	12	5	9	45	43	+2	41
5	Bled	26	11	4	11	50	49	+1	37
6	Dob	26	11	4	11	49	56	−7	37
7	Komenda	26	10	6	10	45	44	+1	36
8	Belinka	26	8	10	8	36	30	+6	34
9	Kresnice	26	9	7	10	29	43	−14	34
10	Litija	26	9	6	11	41	43	−2	33
11	Zarica	26	8	6	12	43	58	−15	30
12	Britof (R)	26	7	6	13	30	44	−14	27	Relegation to Slovenian Regional Leagues
13	Sava Kranj (R)	26	4	5	17	39	70	−31	16^[a]
14	Moravče (R)	26	4	4	18	21	61	−40	16

Source: ^{[citation needed]}
(C) Champions; (P) Promoted; (R) Relegated
Notes:

Pos	Team	Pld	W	D	L	GF	GA	GD	Pts	Promotion or relegation
1	Črenšovci (C, P)	26	17	5	4	56	28	+28	56	Promotion to Slovenian Second League
2	Veržej	26	16	6	4	54	26	+28	54
3	Bakovci	26	15	6	5	68	29	+39	51
4	Renkovci	26	15	6	5	48	20	+28	51
5	Kema Puconci	26	12	8	6	49	33	+16	44
6	Goričanka	26	13	3	10	48	39	+9	42
7	Kobilje	26	11	3	12	37	40	−3	36
8	Turnišče	26	9	7	10	36	47	−11	34
9	Čarda	26	10	3	13	38	47	−9	33
10	Bratonci	26	9	6	11	35	45	−10	33
11	Odranci	26	9	4	13	41	43	−2	31
12	Polana	26	5	6	15	24	63	−39	21
13	Lakoš (R)	26	3	4	19	33	60	−27	13	Relegation to Slovenian Regional Leagues
14	Panonija Gaberje (R)	26	3	3	20	24	71	−47	12	Relegation to Slovenian Regional Leagues

Source: ^{[citation needed]}
(C) Champions; (P) Promoted; (R) Relegated

Pos	Team	Pld	W	D	L	GF	GA	GD	Pts	Promotion or relegation
1	Rogoza (C, P)	26	19	4	3	61	20	+41	61	Promotion to Slovenian Second League
2	Paloma	26	13	10	3	60	30	+30	49
3	Šoštanj	26	13	7	6	50	32	+18	46
4	Zreče	26	10	11	5	42	21	+21	41
5	Starše	26	10	10	6	50	32	+18	40
6	Laško	26	11	5	10	39	33	+6	38
7	Kovinar Maribor	26	9	9	8	34	28	+6	36
8	Hajdina	26	8	10	8	32	39	−7	34
9	Pobrežje	26	9	6	11	35	39	−4	33
10	Dravinja	26	8	6	12	33	37	−4	30
11	Gerečja vas	26	9	2	15	37	49	−12	29
12	Mons Claudius	26	7	5	14	39	67	−28	26
13	Brunšvik (R)	26	6	5	15	26	56	−30	23	Relegation to Slovenian Regional Leagues
14	Kungota (R)	26	3	4	19	23	78	−55	13	Relegation to Slovenian Regional Leagues

Source: ^[1]
(C) Champions; (P) Promoted; (R) Relegated

Pos	Team	Pld	W	D	L	GF	GA	GD	Pts	Promotion or relegation
1	Korte (C, P)	27	14	9	4	50	27	+23	51	Promotion to Slovenian Second League
2	Idrija	27	14	9	4	37	19	+18	51
3	Branik Šmarje	27	13	6	8	51	32	+19	45
4	Jadran Dekani	27	11	7	9	40	26	+14	40
5	Brda	27	11	7	9	43	30	+13	40
6	Tolmin	27	8	11	8	38	33	+5	35
7	Ilirska Bistrica	27	10	5	12	31	41	−10	35
8	Ankaran	27	8	6	13	38	47	−9	30
9	Bilje (R)	27	7	7	13	30	42	−12	28	Relegation to Slovenian Regional Leagues
10	Koštabona (R)	27	4	3	20	14	75	−61	15	Relegation to Slovenian Regional Leagues

Source: ^[2]
(C) Champions; (P) Promoted; (R) Relegated

^ "30 let MNZ Ptuj, page 52" (PDF) (in Slovenian). MNZ Ptuj. Retrieved 25 June 2016.
^ "Zgodovina NK Tolmin (1995–danes)" [History of NK Tolmin (1995–present)] (in Slovenian). NK Tolmin official website. Retrieved 25 June 2016.