This is a partial list of conference champions from the 1949 season. Each of the eight geographical districts chose, by various methods, the team that would represent them in the NCAA Tournament. Conference champions had to be chosen, unless all conference champions declined the bid.[1]
The 1949 season marked the third NCAA Baseball Tournament, which consisted of eight teams divided into four regions. Each region held a three-game series to determine the four teams that advance to the College World Series, which was held in Wichita, Kansas. The four teams played a double-elimination format, with Texas sweeping the tournament and defeating Wake Forest in the final.